Post by nicpcompremuto on May 23, 2019 8:30:47 GMT
Main category, Education
Sub category, Science
Developer, CompOmics
Filesize, 113459
Title, PeptideShaker
macpkg.icu/?id=61024&s=brds&kw=1.16.40+PeptideShaker
● 1.16.40 PeptideShaker
BUG FIX: Fixed it so that the same PI colors are used in the PTM tab as for the other tabs. NEW FEATURE: The FragmentIonTable now supports multiple PSMs in the traditional theoretical m/z values setup as well. Pyteomics Data analysis and interpretation remain major logistical challenges when attempting to identify large numbers of protein phosphorylation sites by nanoscale reverse-phase liquid chromatography/tandem mass spectrometry (LC-MS/MS) (Supplementary Figure 1 online). In this report we address challenges that are often only addressable by laborious manual validation, including data set error, data set sensitivity and phosphorylation site localization. We provide a large-scale phosphorylation data set with a measured error rate as determined by the target-decoy approach, we demonstrate an approach to maximize data set sensitivity by efficiently distracting incorrect peptide spectral matches (PSMs), and we present a probability-based score, the Ascore, that measures the probability of correct phosphorylation site localization based on the presence and intensity of site-determining ions in MS/MS spectra. We applied our methods in a fully automated fashion to nocodazole-arrested HeLa cell lysate where we identified 1,761 nonredundant phosphorylation sites from 491 proteins with a peptide false-positive rate of 1.3%. CCdigest If you have mzIdentML files that fulfill these criteria but do not load in PeptideShaker, please let us know.
Official site:
New iMac Pro macpkg.icu/?id=61024&kw=PeptideShaker-1.19.40-WGjVi.pkg {95305 kb}
New Mojave macpkg.icu/?id=61024&kw=1.16.42_peptideshaker_hetv.tar.gz {94170 kb}
Key for repack PeptideShaker 1.16.40
EFDG6P-CL2MA8-PFTRXB-LEEOAB
3X0RFO-MQDJ3U-MXN5NW-TS87JH
RG5DN3-S4I1ZG-QUWBF3-7P0DVN
TQXNYZ-RE8HK0-W7ODVQ-KSQMKD
74NQVG-MKI9ZB-VNRP60-EHCWSH
407O0O-JQ0MUP-A94J36-TE9JUU
Shift-Option-Command-R isn't available.
LIBRARY UPDATE: Updated mascotdatfile to version 3.4.28.
matches tandem mass spectra with peptide sequences
Proteomics identification Protein identification Visualize peptide Proteomics Identification Protein Identification
BUG FIX: Corrected a threading issue in the validation of multiple mgf files.
FEATURE IMPROVEMENT: Added total number of peptides and spectra, overall sequence coverage, has non-enzymatic peptides, MW and peptide and spectrum spread to the fractions export.
docker run -v /home/my_user/resources:/myresources searchgui -out myresources/parameters_output -db /myresources/
LIBRARY UPDATE: Updated utilities to version 3.43.13.
| 130477 KB | Free 08Uyn PeptideShaker vers 3.16.40 1.16.35 Featured to iMac
| 103247 KB | Latest PeptideShaker ver 1.16.44 36EMBI 1.18.40 Best! version
| 98709 KB | Software PEPTIDESHAKER VERS 1.16.42 44ZTZ 1.16.44 Recomended 10.12.4
| 116862 KB | Get b61Fkx PeptideShaker 1.16.39 1.16.44 on Mac
| 112324 KB | Latest HpI5 version 1.19.40 PeptideShaker 1.16.41 Language Japanese
| 100978 KB | Free PEPTIDESHAKER VER. 3.16.40 XPQMVK 1.16.43 Version OS X
| 97574 KB | Torrent 1.17.40 PeptideShaker 6sR 1.16.42 Japanese version
Recomended OS X PfI_MahJong_version_6.4.0.pkg 6.2.0
Updated for OS X ICONJAR_VER_1.13.3_RQVIVV.DMG 1.13.1
version English Hindi Japanese VERS.3.4.3.INFOGRAPHICS.LAB.7HWLX.TAR.GZ 3.3.2
New OS X F1gyw8_Syncovery_ver._7.88l.app 8.19